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Taking Stock of the Known and Unknown Microbial Space
… decades, advancements in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … metagenome-assembled genomes (MAGs) with varying quality scores representing potential genomes, and nearly 44,000 … User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from … the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab …
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept … While are still working on finalizing the tree and related publication the tree is still in development and not …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria … The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … live in complex communities, like within soils or the gut, they are difficult to study individually. Many …
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Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
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Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
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Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi
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The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils
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Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery
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A global soil plasmidome resource unveils functional and ecological roles of plasmids in soil microbiomes
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Training the Next Generation of Talent
… DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy … was back on campus at the University of California, Merced to start orientation as a first-year graduate student in the … lab, he also took a long view of the opportunity. “I’m getting a picture of the amount of data that’s going to be …
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Ecological and genomic responses of soil microbiomes to high-severity wildfire: linking community assembly to functional potential
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