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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … to link experimental evidence across species. Centralized databases with large-scale transcriptome projects such as Expression Atlas and …
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Marine Microbe Contains Multitudes
… reveals one bacterial species is made of four ecologically distinct groups with different lifestyles. The Science … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, … cells of the uncultivated SAR324. The constellation of data gave the team unprecedented resolution to study the …
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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A Step Toward Controlling Soybean Rust
… yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio … , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA)  proposed sequencing a … . … Phakopsora pachyrhizi on MycoCosm Data Portal …
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Learning to Look
… by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … Roux. “The machine learning approach allows you to quickly scale up once you’ve found the right features that you can …
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Annual Genomics of Energy & Environment Meeting
Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & … infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the JGI offers through proposal calls on a competitive, peer-reviewed basis to the worldwide …
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of first, including the flagship internship … Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in Berkeley, California honing their scientific skills and collaborating with …
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Jane Grimwood Named HudsonAlpha Genomics Chair
City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … was named a Yellowhammer Woman of Impact.     Notable large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… sites designed to collect long-term open access ecological data to better understand how U.S. ecosystems are changing.  … Integrating Collaborations for User Science” (FICUS) call between the JGI and the  Environmental Molecular … and guidelines. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Conservative taxonomy and quality assessment of giant virus genomes with GVClass
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JGI at the AGU Fall Meeting
University: “Putting microorganisms on the map: continental-scale context for thousands of newly sampled microbial genomes from North American watersheds (Invited)” 4pm CST … Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” December 16 7:55am, Convention Center Rm …
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