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The Expanding Universe of Methane Metabolisms in Archaea
… genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than … in nearly all types of anaerobic environments suggest the diversity of methane metabolisms is “vastly underestimated.” … from these 10 metagenome-assembled genomes (MAGs) representing new potential methanogenic, anaerobic …
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You Can Move, But You Can’t Hide
… develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. The Science … by NERSC, another user facility at Berkeley Lab. geNomad is now accessible through the National Microbiome Data … to become an essential tool for researching global viral diversity. geNomad has already been downloaded thousands of …
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The More the Merrier: Making the Case for Plant Pan-genomes
… parents or duplication, also known as “polyploidy,” is common among flowering plants; at least once during their … than any individual genome highlighting the fact that the genetic information in a single reference genome is … that all the genes in a diploid reference genome were present in the actual diploid progenitor of the polyploid …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their … but fecund polar waters. “A lot of our food comes from the North Atlantic, North Pacific and South Pacific fisheries, … the algae-associated microbiomes that influence algal diversity and gene expression. Sailing from pole to pole on …
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Genome-Wide Association Studies across Environmental and Genetic Contexts Reveal Complex Genetic Architecture of Symbiotic Extended Phenotypes
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale … isolating individual bacterial cells and amplifying their genetic material, thus bypassing the need to culture these … in situ functional activities of specific microbial groups within complex communities.  The Microscale Applications …
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Who We Are
… Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative … Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric genomic science user …
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The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
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Crysten Blaby-Haas
… and knowledge-based user facility at Berkeley Lab. She is spearheading the development of a joint user capability … JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and engineering. She earned her PhD in … in bacteria and leveraging molecular biology and reverse genetics to test those hypotheses. From 2011 – 2015, she …
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Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa
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Genetic determinants of endophytism in the Arabidopsis root mycobiome
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Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon  
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