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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … explained. “That is definitely material that the scientific community now can use further. Let’s say somebody …
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Identification of novel biomass‐degrading enzymes from genomic dark matter: Populating genomic sequence space with functional annotation
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Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … and manufacturing. Genomic science lies at the heart of biology, providing the foundational knowledge to … a central role in advancing this frontier by supporting the scientific foundations that drive biotechnology and …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 … Nobel Laureate Jennifer Doudna of the University of California, Berkeley and Berkeley Lab, who discussed the … they, what are they doing, and what traits are expressed based on their movement? Through the recombination process, …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … Laboratory (Berkeley Lab), relied on a model grass system for answers. Their work  recently appeared in  Nature … of the polyploid reference line is simply not true based on previous pan-genome studies. Thus, we must compare …
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Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked … and adaptation. More specifically, it’s enabled several scientific discoveries that are key to understanding how to …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – a quadrillion …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … lab describes the effort that led to the work published in Scientific Reports . Before 2006, Olpidium was one of the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, researchers demonstrated that a new … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office …
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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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