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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene … sequencing and analysis. “Using a technique called metagenome binning, we were able to reconstruct thousands of … and research scientist in Nikos Kyrpides’  Microbiome Data Science group. “What makes this study really stand out …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising juniors who participated in … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … his student’s contributions as reviewing close to 3,800 metagenomes to verify geographic locations and assign …
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Partnerships Development Team
… to JGI resources, as well as target academic, governmental and non-governmental institutions who haven't yet partnered … at large with access to high-throughput sequencing and other resources at the JGI for projects of relevance to … for farmers concerned with improving sustainable soil management practices. … In June 2020, the Department of …
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Taking Stock of the Known and Unknown Microbial Space
… microbial diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an … wake-up call to revive the art of hands-on microbiology and experimental validation.  Microbes run the world, playing … genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality …
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Understanding Wildfire Recovery, Starting in Soil
… floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for … fungi, bacteria and viruses survive. With this metagenomic analysis, it was possible to identify specific attributes — … — mainly actinobacteria, as well as proteobacteria, bacteroidata, and patescibacteria. A major strength of this kind of …
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
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Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining the … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Ian Blaby
… where he leads three groups focused on HTP DNA design and assembly, strain engineering and bioinformatic tool … The Plant Cell . 25: 11, 4305-4323. 2013 Blaby et. al., Experimental evolution of a facultative thermophile from a … Award for Research Excellence … Education … Selected Publications … Awards and Honors …
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