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High-quality RNA extraction and the regulation of genes encoding cellulosomes are correlated with growth stage in anaerobic fungi
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … research activity is focused on developing and implementing new technologies and methodologies that facilitate discovery … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The … and xylose — into fatty acids that could be used for renewable fuel. In fact, lipids can make up more than 90 …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley … to small individual workshops. Of common interest is the method development to study active sites or single cells in … of the Microbial Genomics Program, is enthusiastic about new collaborative projects: “We are excited to continue our …
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The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow
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Sequence-based bioprospecting of myo-inositol oxygenase (Miox) reveals new homologues that increase glucaric acid production in Saccharomyces cerevisiae
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Nikos Kyrpides
Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the … on Microbiome Data Science. His group is developing novel methods for enabling large-scale comparative analysis, as … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial … mediate Sphagnum peatmoss resilience to warming . New Phytol. 2022 Jun;234(6):2111-2125. doi: …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … about the microbial communities deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions …
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Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution
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Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression
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