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A metagenome-level analysis of a microbial community fermenting ultra-filtered milk permeate
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AlloSHP: deconvoluting single homeologous polymorphism for phylogenetic analysis of allopolyploids
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… application approval process. And then, once the review panel recommends proposals for acceptance, it will be sent … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists usually employ … the bridge to help scientists and researchers achieve their analysis goals. Offering this tool establishes the JGI as a …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  … to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & sequencing …
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Bioenergy sorghum stem density increases threefold following internode elongation due to continued accumulation of lignified cell walls and complex regulation of genes involved in cell wall biosynthesis
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… a  few years ago, researchers can request quantitative SIP analysis as a capability in proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host researchers …
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental … microbial and metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … and developed new tools to map that soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Natural Prodcast Episode 23: Aaron Puri
… And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got me … to find natural products that may have been missed by companies like Pfizer or Wyeth or that because they probably …
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Genomics-enabled analysis of specialized metabolism in bioenergy crops: current progress and challenges
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Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species
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