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JGI Scientists Pen Genome Watch Articles
Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and they agreed, providing three articles for the journal with Du Toit as their editor. The partnership has … “Given the great expertise in microbial genomics and metagenomics of the microbiology-focused groups at the Joint …
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Trent Northen
… has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and … ecosystems (EcoFABs). … Trent Northen is the Metabolomics Science Program Head at the JGI. Click to learn more about … (16), 567–571 (2019) doi: 10.1038/s41592-019-0465-0. Couradeau E et al. Probing the active fraction of soil …
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Streamlining Regulon Identification in Bacteria
… transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … regulatory network in bacteria, enabling the discovery of regulatory cascades as well as crosstalk … genes associated with a given transcription factor is resource-intensive and unscalable. To test the efficacy of …
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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JGI on the 2021 Highly Cited Researchers List
JGI staff who mentored students this past year, through programs including the JGI-UC Merced Genomics Internship Program and the DOE Office of Science Graduate Student Research (SCGSR) Program. (Watch … that anaerobic fungi from herbivore poop might be a new source of novel compounds to help bolster the bioeconomy. …
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2024 Progress Report
Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead … complex biological and environmental systems. We optimize our service to the community through responsibly managing … attendees with a rich agenda across our scientific programs, as well as workshops that gave participants …
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Viruses Reprogram Cells into Different Virocells
… infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … In  their study , which appeared in  The ISME Journal , they focused on how virus-infected microbes are … how nutrient availability, or lack thereof, impacts viral infection and the metabolism of the resulting …
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MGM Workshop at Fisabio Summer School
June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is addressed to students … professionals of biology, biomedical research, the health sciences and related fields who are interested in learning … sharing concepts, tools and research results in genomics, metagenomics and the human microbiome. The workshop will …
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High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to Africa to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint … for the accepted proposals, said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize poorly-studied algal and viral …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… analysis capability available through the  Community Science Program (CSP) . This includes mass … anywhere around the world can apply to access the JGI’s resources. Q:  Where can I get information for funding by JGI? … on a peer-reviewed competitive basis via its  User Programs . Q:  Are applicants outside of JGI eligible to …
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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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