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Game On: High School Students Drive Everglades Metagenomics Study
Sample Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in … of genes involved in environmentally significant metabolic pathways related to methane production, nitrogen fixation, and dissimilatory sulfite …
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Taking Stock of the Known and Unknown Microbial Space
… decades, advancements in sequencing technologies have led to an abundance of microbial genomes becoming available to the global research community.  Published January 17, … of the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest … around the world whose livelihoods depend on cotton production, and the crop’s annual economic impact of $500 … of cotton biology and lead to higher yield and improved fiber while reducing input costs. Growers, the …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
Michelle O’Malley and Tom Lankiewicz of UC Santa Barbara discuss the importance of … presumption on its head and opens up a new avenue to explore for efficient biofuel production. …
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Partnerships: Myco-Ed
… fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory techniques and data analyses compile original data for … exercises … Beyond providing a scalable solution for production of high-quality fungal reference genomes, this …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … tools beyond biomass breakdown, extending into biochemical production.    Over time, as these projects have delivered … and porting parts from nature — enzymes, transporters, pathways — into microbes that we do know, to advance our …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … environmental challenges. Oh, the magical world of the cow stomach. Rumen – and its microbes – are really a powerhouse. … study subject that could lead to more sustainable energy production.  However, less than 10% of the microbes found in …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… evokes images of fanboats skimming over swamps, while alligators peer through the waters and clouds of insects hover … encompass a wide range of ecosystems ranging from wetlands to tree islands to cattails. In 2018, the US Department of … to give his students this experience. My current career path was heavily influenced by my own high school biology …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s … breaking our methods was these damn secondary metabolite pathways. So that’s kind of how I fell down the rabbit hole. … from really being functional was these secondary metabolite pathways. So why was that? What is it about secondary …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % … System (LIMS) and temporary shut down of the sequencing production line to accommodate data migration requirements. …
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Calculating the Costs of Multiple Switchgrass Gene Copies
Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its habitat range. But at what cost?  A … restoration and as a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
Congratulations to Susannah Tringe , one of eight scientists and engineers … in interactions with plants, and as drivers of methane production, nutrient cycling, greenhouse gas emissions, and water recycling.” Tringe is the interim director of Berkeley Lab’s Environmental Genomics and Systems …
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