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A Collaboration to Improve Plant Genome Annotations Across Species
… improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome Institute (JGI)*, a national user … resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene …
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, guidance, and counsel on the effective management and strategic objectives for the …
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JGI-UC Merced Interns Share Their 2021 Experiences
… from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone … the goal of inspiring students to embark on a career in genomics and to help foster a diverse future workforce in … check out their stories, told through print narratives, videos, a podcast episode, and presentations below. …
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MGM Workshop at Fisabio Summer School
… June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health sciences …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… DNA for genome sequencing was no easy task. The traditional way of collecting them is through a method called … live in our immediate microbiome. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its … at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … Computing Project , the JGI — along with the National Energy Research Scientific Computing Center, Oak Ridge … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell … Cornell University, NY Postdoctoral scientist, IBM Watson Research Center, Yorktown Heights, NY …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… Phytozome workshop held during the June 2022 CROPS Conference at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of Energy Joint Genome Institute, and facilitates accurate and …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational … Pascal, France Ph.D. in Bioinformatics, Ecology and Evolutionary Biology, Université Blaise Pascal, France …
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