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Picking Up Threads of Cotton Genomics
… and importance in the fabric of our lives. In the United States, cotton production centers around two varieties: 95 … of cotton A and cotton D genomes. A multi-institutional team including researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Integrating Microbial Community Data Into an Ecosystem‐Scale Model to Predict Litter Decomposition in the Face of Climate Change
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and … of a new family of Cas proteins, named Cas14. Using these sequences as a starting point, JGI data … in part by grants from the Paul Allen Frontiers Group, the National Science Foundation Graduate Research Fellowships and …
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Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … bacterial and archaeal genome sequences have been generated using techniques that the JGI has pioneered, including …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available … team then extended their analysis beyond the reference set, using two additional approaches. To search environmental … the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231. …
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The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who translate genomic information into biological function. Through our CSP Functional Genomics … are accepted year-round; the next deadline is Jan. 30, 2025. …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays … as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … by a DOE Joint Genome Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … at protein function within them. The work was led by a team of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Incorporating Genomics and Bioinformatics across the Life Sciences Curriculum
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Exabiome: Advancing Microbial Science through Exascale Computing
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