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John Vogel
… genomic resources that fostered the widespread adoption of Brachypodium distachyon as an experimental model for the … Varoquaux, et. al.N. 2019 Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic … et. al. 2014 Genome Diversity in Brachypodium distachyon : Deep Sequencing of Highly Diverse Inbred Lines 2014 Plant …
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Help from Citrus’ Bitter, Hardier Cousin
… assembling, annotating and analyzing the genome in order to find the genetic traits responsible for  P. trifoliata ’s … Journal.  this study included the discovery of candidate genes that confer resistance to citrus greening disease. …
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A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
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Genomic profiles of four novel cyanobacteria MAGs from Lake Vanda, Antarctica: insights into photosynthesis, cold tolerance, and the circadian clock
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The More the Merrier: Making the Case for Plant Pan-genomes
… of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a … copies of some genes. This polyploidization process is ongoing and many plants, including agricultural staples and … One Polyploid Species, Two Subgenomes Among the team’s findings is that the polyploid  B. hybridum formed more than …
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Forming Scientific Connections and Building Community
… in bacteria” Erika Maquiling : “Being a JGI intern means going to the workshops and listening to the speakers talk … Mentors: Yi Zhai & John Vogel Project: Characterization of Brachypodium distachyon root transporters in … a multiplex genomic integration system for the selection of genes essential for specialized carbon utilization ” Jesica …
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What Happens Underground Influences Global Nutrient Cycles
… to learn more about climate change feedbacks including drought and increasing temperatures on tropical rainforests, … team is specifically interested in conducting a controlled drought and multi-isotope labeling experiment, and the data will allow them to better understand the impacts of drought on plant metabolism and particularly, what happens …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… cyst nematode and the soybean sudden death pathogen. In the genes-to-function focus area, Daniel Kliebenstein from the … Dick of The Ohio State University aims to study plant drought resilience in the Sahel, an arid region of West … and under erratic rainfall conditions. To help mitigate drought, famers are growing millet with an indigenous shrub …
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Genome organization of the vg1 and nodal3 gene clusters in the allotetraploid frog Xenopus laevis
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Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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Microbial co-habitation and lateral gene transfer: what transposases can tell us
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