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Accelerating Metagenomics Discoveries with Deep Learning
… data, or DNA sequencing data gathered from whole samples rather than single cells or isolated strains, is … layers. The architecture of these algorithms, inspired by communication networks found in nature, allows machines … between JGI and scientists in the Computational Resources Division (CRD), in order to create more useful …
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JGI@25: Strengthening Soybean
… and oil was also the largest plant project completed by the JGI. It has since been cited more than 5,400 times, … a Genome Insider podcast minisode.)  In 2016, the JGI accepted a proposal from Sebastien Duplessis of the French … “All along the way, it was just like rediscovering genetics, with the evolution of sequencing technologies and …
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JGI@25: Building a Better Bean
… as a biofuel. To this end, a team of researchers led by Jeremy Schmutz of the JGI and the HudsonAlpha Institute for Biotechnology; Phil McClean of North Dakota State University; Dan Rokhsar of the … was published online June 8, 2014 in the journal Nature Genetics . “Common beans are a major societal crop for those …
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Tanja Woyke Elected to American Academy of Microbiology
… on developing and harnessing single-cell methods to access the genetic material of uncultivated microbes and link … am thrilled to see Dr. Woyke’s important work acknowledged by this most prestigious honor,” said Axel Visel , JGI … caliber support the JGI User community in accessing our resources and help them to push the boundaries of energy and …
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How Filamentous Fungi Sense Food
… regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley … Fungus” and that are publicly available at the Fungal Genetics Stock Center. This work was supported by an Energy …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… internship in 2018. She selected one of the projects posted by JGI fungal researchers, Igor Grigoriev and Asaf Salamov, … into why fungi have been so evolutionary and ecologically successful,” Wint said. “Fungi play an important role in the … year of PhD research at UC Merced. She plans to continue expanding her understanding of mathematics and …
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JGI Accepts 17 Proposals for Community Science Program
… focus on harnessing genomics to developing sustainable resources for biofuels and bioproducts. Andrew Nelson of the … of California, Berkeley aims to redesign and engineer algae by identifying the algal regulators that could boost lipid … how microbes interact with their environment, potentially accelerating soil carbon loss. Orange ribbons mark the heated …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… populations for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at the Danforth Plant … up and down the highways of the continental United States, occasionally pulling over to the side of the road to collect … has become a national and international leader in genetics and genomics research and biotech education and …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… and structure following a genome duplication event that occured some 60 million years ago. Massive gene loss, rampant … ferns’ secondary metabolites and associated genes are great resources for bioremediation, new agricultural applications … next-generation plant biology. … The work conducted by the US Department of Energy Joint Genome Institute is …
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An Integrated Dataset to Understand Ecosystem Interaction
… to large ecosystem-level processes for the first time. By collecting data from 27 different poplar ( Populus … the tree’s production as a biofuel feedstock. Public accessibility to the data made available through this … the trees. The data set generated is 25 terabytes in size. Resources for genomic sequencing, analysis and …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… to the atmosphere. Peat bogs also serve the ecosystem by minimizing flood risks and filtering water. Peat formed there over thousands of years sequesters more carbon than all other … was theorized that sex determination was possibly driven by genetics, or even temperature. By sequencing the genome, …
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IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase
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