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… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … to characterize the transcriptome – the complete set of RNA molecules transcribed from all the genes within a cell or …

… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics … are known, we also have the capability to set up “super-portals” to organize the two haplotypes in a central … and numbered based on scaffold length (the largest to smallest). They do not match each other in different …

… Maureen Coleman and Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, Tingting Xiang and Sheree Yao. ] ] The JGI welcomed 14 … science projects that address biofuel and bioproducts production, leveraging efforts including systems-based …

… Machine learning methods were applied on sequenced fungal genomes to … the largest class of fungi, by lifestyles. The machine “learned” to identify data generated in part through … major food crops and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  …

… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University … Kunakom S, Otani H, Udwary DW, Doering DT, Mouncey NJ. Cytochromes P450 involved in bacterial …

…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a host, and not just any host will do. … like  carbon fixation , nitrogen cycling and methane production. Meanwhile, environmental viruses are constantly …

… Trained on environmental data, a new JGI tool more accurately … 4 billion parameters is not a task that can be handled by a small computer cluster. GenomeOcean was trained on a supercomputer operated by the National Energy Research … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …

… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, …

… Microbial communities living near hydrothermal deep-sea vents hold vast potential for … They also produce a range of novel enzymes and other biomolecules that could potentially be applied to biotechnology … applications in biogeochemical engineering,  biofuel production and more. …

… In 2024, the DOE Joint Genome Institute and Alabama A&M University piloted an internship … and investigate how transporter proteins regulate the production of root exudates, which overall influences the …

… Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved … by identifying the algal regulators that could boost lipid production. In their approved proposal, Frederick Colwell of …

… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , … in turn affecting environmental and human health, energy production and agriculture. Understanding the compositions … awards DEB1840243, EAR1836768 and DEB1457794. Funding support also was provided from Colorado State …