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… and University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has … a diverse workforce and scientific community (working with the JGI) as well as our efforts in workforce …

… A. et al. 2023. Identification of mobile genetic elements with geNomad. Nature Biotechnology . Schulz et al. 2022. …

… Zhong Wang and Science Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant … of the fifth summer of its flagship education program with UC Merced. JGI Director Nigel Mouncey and program organizers Wang, Visel and Sindi, along with UC Merced Undergraduate Research Opportunities Center …

… approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the … cycle in wild populations of green sulfur bacteria with long standing virus-host interactions. The ISME Journal …

… such tools has been a collaborative effort. For example, with support from the  Exascale Computing Project , the JGI — along with the National Energy Research Scientific Computing … To put these efforts into perspective, we caught up with JGI staff, collaborators and users to see how software …

… would allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their roles within their environments. Summary The traditional shotgun …

… April 2024 — through serving an increased number of users with a record output of products, making data easier to … number of primary users — 2,456 — had active proposals with us, along with more than 15,000 secondary users who made use of our … Our primary objective is to serve our user community with large-scale advanced genomic capabilities. This year we …

… our  2022 Annual Meeting . The meeting was a hybrid event, with guests joining onsite at the Integrative Genomics … delved into algae blooms and the alga-viral interactions within them; and Susan Wessler of UC Riverside, who … and recaps of all three keynote talks follow, starting with Jennifer Doudna.  Jennifer Doudna , UC Berkeley “We …

… fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the green pods in … years ago. Studying the cotton genomes provides breeders with insights on crop improvements at a genetic level, … and resource for plant genomes. They are annotated with the JGI Plant Annotation pipeline, which provides high …

… Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out … expanded the estimated diversity of Bacteria and Archaea With phylogenetic diversity standing in as a representative … including isolates, metagenome-assembled genomes (MAGs) with varying quality scores representing potential genomes, …

… a long-standing interest in microbial genetics that started with his education and carried forward into his roles as a … 33 pending. Includes: Enhancing spinosyn production with oxygen binding proteins. (2014) U.S. Patent Application … 2022. Expanding the Genomic Encyclopedia of Actinobacteria with 824 Isolate Reference Genomes. Cell Genomics 2: 100213 …