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Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113T)
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, has unveiled these motility tools in hot spring  Chloroflexota .  Ocean-dwelling  … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
Nikos Kyrpides, Natalia Ivanova and Simon Roux, along with data from a consortium that included Susannah Tringe and … and Roux also worked together on the development of a new software tool called geNomad that identifies and classifies …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted … predictor of gene expression levels using machine learning tools. “This was very exciting to see how Rhondene not only … the research question and applied it to such a large data set, but also went all the way through to convert her …
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Training the Next Generation of Talent
Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the … genome research and apply experimental and computation tools to solve research problems. In Visel’s group, Olmstead … says. “Many academic labs don’t know how to analyze RNA-Seq data very well, sending it out to companies. I’ll take that …
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The Expanding Universe of Methane Metabolisms in Archaea
… the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome data … datasets from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis …
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Pinning Down a Piece of Photosynthesis
… an array of experiments at universities and national user facilities, researchers found that this protein detects … or DRI for short.  A kaleidoscope of structure-function data To study DRI experimentally, Blaby-Haas, Grosjean and … function inside the cell, Grosjean used the JGI-developed  guideRNA and Sequence Extraction Tool (gRNA-SeqRET) to …
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Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis▿ †
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
In the last two episodes, we’ve covered the specialized software and supercomputers behind this project. But every …
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Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)
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Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95T)
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Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262T)
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