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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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Introducing New Members of the JGI User Executive Committee
… in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large … that [public but use-restricted] exist on [the JGI data portal] IMG or how to deal with situations in which they … Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would like to help advance JGI …
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PhycoCosm Tutorial
… the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US …
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The Expanding Universe of Methane Metabolisms in Archaea
… the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) … datasets from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses.
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Bipartite graphs in systems biology and medicine: a survey of methods and applications
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IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
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Anatomy and development of the nervous system of Nematostella vectensis, an anthozoan cnidarian
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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