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… used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program generated many new … reflecting factors such as the quality and number of datasets for human microbiome data. In other environments, …

… , Susannah Tringe , and Tanja Woyke  were part of a “big data” mining effort reported in  Nature Biotechnology that … from environmental samples around the world. Much of the data had been generated from samples provided by more than …

… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and … DNA (ssDNA). The discovery was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes … for Cas12d homologs across IMG/M’s assembled metagenomic data. It turned out that some of these were shorter than the …

… Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area …

… multi-institutional research team that combined field data with a reference switchgrass genome to associate … hosted two JGI Engagement Webinars promoting the JGI fungal data portal MycoCosm and the algal portal PhycoCosm. … global cities. He and his colleagues used an extensive JGI database to investigate viruses detected in the samples. …

… that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … actually tested in the 2011 paper. In 2015, the study’s dataset became material for a hands-on undergraduate … three other universities. You can learn more about how JGI data supports higher education in this JGIota , a Genome …

… switchgrass genome sequence is available on the JGI plant data portal Phytozome. The combination of field data and genetic information has allowed the research team … Plant Dataset …

… to get credit for their scientific contributions through data citations, authorship, and presenter opportunities. …

… Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, … he curated several small sets of phylogeny, biosample metadata tasks we assigned.”       Click here to watch a video …

… Society of America and is also a National Microbiome Data Collaborative (NMDC) Champion. As an early career … early career researchers and new users, advise on data release and sharing policies, and help develop programs …

… Data from marine heatwave event may foreshadow climate … in marine microbial communities. Using the JGI-generated data, Sachia Traving, a former postdoctoral fellow in the …

… J (Senior Editor 2016-2021), Peer J (2015-2019), Scientific Data (2017-2019). Reviewer for major journals and funding …