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DNA Sequence Analysis of an Inversion Hot Spot in Lobeliaceae Plastomes
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The Big Deal About Short Plants
… stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — …
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Tracking the Origins of Methane-Producing Microbes
… estimated to produce 500 million tons of methane a year, which is over half the total global methane production. They … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … Cells team member Frederik Schulz to screen the microbial communities collected. The team noticed some of the genomes …
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Synthesis
Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is … assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate … develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program.    Representative software …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR …
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Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics
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Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass
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The survivor strain: isolation and characterization of Phormidium yuhuli AB48, a filamentous phototactic cyanobacterium with biotechnological potential
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Characterization of a polyketide synthase in Aspergillus niger whose product is a precursor for both dihydroxynaphthalene (DHN) melanin and naphtho-γ-pyrone
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An Automated Tool for Assessing Virus Data Quality
… and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled … recommended specific guidelines and best practices for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the … aquatic to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of the … of the Early Career Research Program (ECRP). His project, “Characterizing Virus-Driven Alterations of Microbial …
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