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The Earth BioGenome Project 2020: Starting the clock
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Tracing the Evolution of Shiitake Mushrooms
… for converting plant waste into sugars for  biofuel production. Additionally, these fungi play a role in the global  carbon cycle . As decayers, Lentinula fungi access carbon previously locked away in wood, converting it into their own carbon-rich structures, as well as atmospheric carbon dioxide.  Summary …
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Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens
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Katherine Louie
… became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced mass spectrometry …
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Complete Genome Sequence of the Cellulolytic Thermophile Clostridium thermocellum DSM1313
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… them to environmental and energy challenges. But not all scientists have the expertise and resources to do DNA design … worked with the JGI DNA Synthesis Science Program, which started in 2012, and what they’ve discovered through their … plants. To better pinpoint the biosynthetic routes that produce terpenes, the JGI synthesized several of the underlying …
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A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
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JGI@25: The Little Alga That Could
… and cell motility. It’s also a model for studying lipid production in other algae that may be more viable for sustainable biofuel production. The JGI published a partial sequence of … of the Carnegie Institution, and Sabeeha Merchant of UCLA. Merchant is now at UC Berkeley and also a faculty …
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Building Sphagnum Genomic Resources
… reason, the U.S. Department of Energy is overseeing the SPRUCE (Spruce and Peatland Responses Under Changing Environments) … unparalleled model system for ecological and evolutionary genomics .” Understanding the nature and genetic basis of …
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Annotation survey and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data … California State University campuses for biotechnology education as part of a course-based undergraduate resource … Hear from CSU San Marcos Professor Matt Escobar and UC Davis Associate Professor Matthias Hess, also the chair …
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Rex (Encoded by DVU_0916) in Desulfovibrio vulgaris Hildenborough Is a Repressor of Sulfate Adenylyl Transferase and Is Regulated by NADH
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