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The genomic basis of trophic strategy in marine bacteria
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Life strategies for Aminicenantia in subseafloor oceanic crust
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An Integrated Dataset to Understand Ecosystem Interaction
… time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … wildlife habitats and water-quality regulation. Focusing on the rhizosphere and interactions between the trees, … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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Making a Lichen Together
… time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership more clearly. … comprised of two (or more) participants. One is a fungus (usually belonging to the ascomycetes, one of the two … by a DOE-Biological Environmental Research grant No FWP 61327 to FRC and PL (for RNAseq). The work at the Joint Genome …
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Three Join the JGI User Executive Committee
The JGI User Executive Committee (UEC) recently welcomed three new … JGI offers, as well as proposal review procedures and the organization of the JGI Annual Genomics of Energy & … Greenham stepped down at the end of her term. In late 2023, the JGI launched a solicitation for nominations for three …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two … meetings were still a thing, i.e. in January. She talked about her  Community Science Project proposal with JGI, in … enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is the largest supporter of …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… all that it has contributed, and what they’re excited about in JGI’s future. Find recordings and recaps of these … nearly two decades, was filled with ups and downs, challenges and triumphs, and a lot of hard work along the way. … to be junk DNA, so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many …
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Adaptation strategies of giant viruses to low-temperature marine ecosystems
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JGI@25: Stories from Intern Alumni
… next few months, we’ll be revisiting a number of notable achievements that showcase our collaborations and … science that will help solve energy and environmental challenges. Over the past 25 years, the JGI has hosted interns from a number of universities and organizations. From field research and wet lab experiments, …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… science that will help solve energy and environmental challenges. Oh, the magical world of the cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy … expanded into three other universities. You can learn more about how JGI data supports higher education in this JGIota …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising juniors … described his student’s contributions as reviewing close to 3,800 metagenomes to verify geographic locations and assign … tasks we assigned.”       Click here to watch a video about the Biotech Partner summer interns at the JGI. What …
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A Collaboration to Improve Plant Genome Annotations Across Species
… specific conditions – in over a dozen plants. To learn more about the project, HudsonAlpha’s Research Communication … It was developed to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome Institute (JGI)*, … single lab. Growing different species poses significant challenges, as establishing standardized growth protocols …
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