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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started … the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has brought … changed what I want to do with my life,” “I can code.”  Jorge Arroyo , director of UC Merced’s Undergraduate Research …
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Atypical Divergence of SARS-CoV-2 Orf8 from Orf7a within the Coronavirus Lineage Suggests Potential Stealthy Viral Strategies in Immune Evasion
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … and functional genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes … Team    … The Integrated Microbial Genomes group is focused on:  Developing state-of-the-art data processing and …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a … is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI … for investigating plant-microbe interactions. A final recent advance in CRAGE is the addition of CRISPR …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by … degrade the plant biomass. In order to learn more about these regulatory networks in the model fungus  N. … and Development Program of Berkeley Lab, among other organizations. … We acknowledge the use of deletion strains …
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Fungus Fuels Tree Growth
… a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can … were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the … the next generation of scientists. She shares her thoughts about the experience below. In the summer of 2018, Jonathan …
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Taking Stock of the Known and Unknown Microbial Space
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … assesses what fraction of the microbial diversity we know about, and proposes a path forward to curate and cultivate …
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University of California, Merced Internship Program
Merced graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to … Merced students have contributed to the research of numerous JGI scientists. Interns say their experiences allowed them to:  Learn new skills. Experience industry-level work and coding. Receive mentorship, network and …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising juniors … the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s … tasks we assigned.”       Click here to watch a video about the Biotech Partner summer interns at the JGI. What …
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Gene Expression: From On-Off Switch to Dial
… approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. Summary Life is all about balance. This study,  recently published in the  …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
As warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … other words, some like it hot; some do not. “We can think about the ocean, naively, as a sort of homogeneous medium. …
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