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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The Science … genomics can add significant value to the other commonly used culture-independent sequencing approaches including … remain unknown. In recent years, advances in sequencing technologies and bioinformatic tools have helped decode the …
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Boosting Small Molecule Production in Super “Soup”
… to keep processes running smoothly. As  reported August 26, 2021, in  Nature Communications , researchers led by … and so one of the things that I think is so special about this collaboration is that we’re doing work in yeast, … Rapid Prototyping of Genes and Pathways” at the JGI Annual Genomics of Energy & Environment Meeting on September 1, …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… (thermophilic) microbes are of interest for their potential use in number of biotechnological applications. Molecular … technology that enables researchers to generating thousands to millions of copies of a particular DNA sequence … archaeal lineages, the team relied on a combination of phylogenomic analyses, transcriptomics for microbial genomic …
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Benjamin Cole
… Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light … day. At the Joint Genome Institute, Dr. Cole’s research focus has been on understanding how microbes can colonize plant … environment using emerging single-cell characterization technologies (scRNA-seq, Spatial Transcriptomics). …
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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
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Chloroflexi CL500-11 Populations That Predominate Deep-Lake Hypolimnion Bacterioplankton Rely on Nitrogen-Rich Dissolved Organic Matter Metabolism and C1 Compound Oxidation
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W. Berkeley Kauffman
… Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the development of new applications utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, single-particle genomics, and metabolic …
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Frederik Schulz
… leading the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and …
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Zhiying Jean Zhao
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A Plant Root Atlas for Tracking Developmental Trajectories
… single root cells and combining the information with previously published datasets. The work was  recently published in … is also focused on single-cell and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel … developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be available for …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to … the world’s rivers and their microbial communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on what it means in a …
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FICUS-NERSC/KBASE
… Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … for proposals in biological data science as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase …
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