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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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Calculating the Costs of Multiple Switchgrass Gene Copies
… team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … by our research team surveying the genomic and phenotypic diversity across the natural range of switchgrass found that … to address long-standing evolutionary ecological hypotheses about how C4 perennial grasses like switchgrass respond to …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that … the world’s rivers and their microbial communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on what it means in a …
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UC Merced Interns Reflect on Their JGI Summer Projects
… past summer, 10 students from UC Merced worked closely with JGI scientists on research projects that contribute to the … wide — from implementing new data visualization tools, to using natural language processing techniques to categorize genetic information. Learn more about their work here in a series of videos produced by JGI …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name … mushrooms are white rot fungi, belonging to an elite group of decomposers that can break down all of wood’s … work (proposal:10.46936/10.25585/60001048) conducted by the US Department of Energy JGI (https://ror.org/04xm1d337), a …
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The Power of One, Amplified
… by collecting nearly 500 single cells from a single low diversity hot spring sediment sample. Their work showed that … genomics can add significant value to the other commonly used culture-independent sequencing approaches including … and Rex Malmstrom of the JGI’s Microscale Applications group . Cells were randomly sorted, whole genome amplified, …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … between.” To find an explanation, his team tracked the thousands of bacterial and archaeal species using a DNA-based … Building off multiple collaborations, Lab researchers working with the JGI successfully simulated how successive …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Program . For example, green algae represent the largest group of primary producers generating organic compounds … University of East Anglia was also approved to learn more about the roles of diatoms in carbon fixation and in aquatic …
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New Insights Into the Influence of Plant and Microbial Diversity on Denitrification Rates in a Salt Marsh
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Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome
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Functional and genomic diversity of methylotrophic Rhodocyclaceae: description of Methyloversatilis discipulorum sp. nov.
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Diversity and population structure of northern switchgrass as revealed through exome capture sequencing
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