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… through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  … the gene counts have similarly gone up from 13-25 to 12-39. “Overall,” the team concluded, “we provide a …

… Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team … targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, meaning … biological information. As I’ve said earlier, 16 to 56 percent of plant genes are poorly characterized. So the …

… Streptomyces is more than just a funny word. The 500 species described within the group are responsible for …

… Using this workflow, the team combed through more than 5,000 data sets of RNA sequences (metatranscriptomes) …

… updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, gene … deployed (as the foundation for Phytozome v10) back in 2014.  Several components of that codebase are no longer …

… For the last 15 years, Ray Turner has been one constant for the Joint … Naval Commander retires from Berkeley Lab. For the last 15 years, Ray Turner has been one constant for the Joint … Deputy post by  Nick Everson , the person Ray hired in 2007 to serve as JGI’s Business Manager. In 2012, Nick jumped …

… the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or … DNA base is a methylation of the base cytosine at the 5th position on its carbon ring, or 5mC. In many organisms, 5mC is an important piece of how …

… Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the …

… heads JGI’s  Microbial Program . The team mined more than 8,500 publicly available metagenome datasets generated from … as a barcode to sift out virus fragments, reconstructing 2,074 genomes of large and giant viruses. More than 50,000 copies of the MCP were identified in the metagenomic …