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Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate … which were not treated with fungi, they used multiple approaches to look at gene expression in both plant cells … BioEnergy Institute is a DOE Bioenergy Research Center managed by Berkeley Lab. For more information, please visit  …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate … which were not treated with fungi, they used multiple approaches to look at gene expression in both plant cells … BioEnergy Institute is a DOE Bioenergy Research Center managed by Berkeley Lab. For more information, please visit  …
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JGI@25: Strengthening Soybean
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity … genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their … computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is …
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IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
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IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
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Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation
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From Competition to Cooperation
… fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done … relationships outside of the root cells) lineages. To learn why, researchers analyzed 135 fungal genomes representing …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The … the University of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways … More importantly, when faced with a veritable buffet of carbon sources, these fungi detect which complex chains are …
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Better Genome Editing for Bioenergy
… team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The … Cas9 needs guide RNA to lead it to the correct sequence to snip — but not all guides are effective. To … fuels from alternative sources. Moreover, the team says the approach they used to validate their set of guide RNAs could …
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Refining the Process of Identifying Algae Biotechnology Candidates
… [subhed -- copy to summary above^ as well ] The Science The recipe for … Researchers collaborating across multiple institutions have sequenced and analyzed the genome of an alga that thrives in … content of biofuels sourced from algae. The collaborative approach highlights how the pipeline could help researchers …
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