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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … study published in Microbiome has uncovered that SAR324 encompasses four subgroups, adapted to different oceanic … out that, without the JGI, the discoveries made in this project wouldn’t have been possible. Scientists hadn’t known …
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Understanding Wildfire Recovery, Starting in Soil
… a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … burned material — that many microbes in burned soils had in common.  To complete this analysis, a multi-institutional … DOE Office of Science National User Facilities in a single project. … This work was supported through a USDA NIFA award …
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JGI at the AGU Fall Meeting
Meeting, with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting … Agricultural Lands Changes Nitrogen Cycling Microbial Communities and Reduces N2O Production Potential in … poster B45O-1813  : Maggie Bowman, PNNL: “EMSL’s 1000 Soils Project: core collection strategy and data types available” …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… polar oceans give rise to some of the largest food webs on Earth. And at their base are microscopic, photosynthetic … study suggests, is displacing these important cold-water communities of algae with warm-adapted ones, a trend that threatens to destabilize the delicate …
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JGIota: Looking Back at Methane-Making Microbes
We count on livestock for food and fiber, but raising these animals … produces an atmosphere-warming gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea breaking …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk … sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, Baldrian’s team …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … reflected on how the JGI-UC Merced Intern partnership had become a “model” of sorts at the Lab. “This project represents part of our long term efforts to …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every … species of Olpidium are obligate endoparasites of some common crops, such as lettuce and tobacco. Olpidium itself …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in many regions due to more extreme … in Sorghum (EPICON) is a five-year, multi-institution project funded by the DOE Office of Biological and …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
Register here Book your stay at the conference venue This inaugural event will bring together … and applying laboratory ecosystems to help transition microbiome science from largely observational to … EcoFAB 2025 Conference is organized by the EcoFAB Steering Committee, dedicated to advancing standardized fabricated …
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Janey Lee
Janey provides support for custom single-cell user projects and projects within the group. …
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Marcel Huntemann
Marcel is in charge of several production pipelines (gene calling, functional annotation and methylomics) that run on microbial … intra-department data exchange and assists with large scale computations on R&D projects. …
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