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Cultivating Symbiotic Antarctic Microbes
… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and cultivated microbes, … the Archaea isolated from Deep Lake, the coldest place on Earth known to support life, and previously sequenced by the …
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Simon Roux
Program. His responsibilities include the development of novel computational tools to identify virus sequences, the … the quality and completeness of metagenome-assembled viral genomes. Nature biotechnology 39, 578-585. Roux et al., … revealed as pervasive in bacteria and archaea across Earth’s biomes. Nature Microbiology 4, 1895–1906. Schulz et …
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Eelgrass Proves to Be Much Younger Than We Thought
… its history. Their research, published in  August 2023 in  Nature Plants , was able to assess absolute time … the oceans  about 3 million years ago. The study shows that figure is likely closer to a mere 250,000 years — with many … years ago, when eelgrass traveled across the ocean current from Japan to colonize the southern California and Mexican …
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JGI at the AGU Fall Meeting
… context for thousands of newly sampled microbial genomes from North American watersheds (Invited)” 4pm CST Convention … Hall D-F poster B25J-1604: Eoin Brodie, Berkeley Lab: “Uncovering microbial metabolic trajectories during the …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… of several communities in New Mexico via leakage from a local dry-cleaner. Researchers  identified two … The DOE has been similarly invested in environmental management, contributing to bioremediation efforts for decades. … by continuing to access the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the …
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in cell-free environments? … the sugar glucose to the products including ethanol and 2,3-butanediol (BDO). To do so, the yeasts received … 1, 2021. Register here to hear him and others.   Byline: Massie S. Ballon     … The U.S. Department of Energy Joint …
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Sequencing of Genomes from Environmental Single Cells
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Biases in genome reconstruction from metagenomic data
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Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video … measurements of primary and secondary metabolites from plants, microorganisms, and environmental samples using … health is outside of JGI’s mission. However, analysis of novel secondary metabolites from plants could be a good.  …
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JGI@25: Using Team Science to Build Communities Around Data
… at over 180 organizations in 29 U.S. states and 35 countries. (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … these initial efforts: Spatafora and Jason Stajich from UC Riverside would focus on broad sampling of early …
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JGI@25: Stories from Intern Alumni
Over the past 25 years, the JGI has hosted interns from a number of universities and organizations. From field research and wet lab experiments, to …
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