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The Expanding Universe of Methane Metabolisms in Archaea
… an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years ago, … said first author McKay. “Now we’re adding two more: one ( Candidatus Korarchaeum cryptofilum WS) is … and the other ( Ca.  Methanodesulfokores washburnensis) is more distantly related, containing genes for both methane …
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Streamlining Regulon Identification in Bacteria
… sigma factors addressed in the study were found to control more than 100 genes, one of which was directly characterized …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… by the JGI and ZyGoLife in recent years. With the much more extensive taxonomic and genetic sampling, our study … some of the most pressing challenges of our time. For more information, please visit  …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
The research collaboration has been incredibly productive; more than 10 papers, including two Nature Plants … to test enzymatic pathways, which make valuable products, more quickly. In the cell-free approach, cells are grown and … pathway enzymes, and thus evaluate changes to the pathway more quickly.  The JGI has also helped LanzaTech researchers …
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Learning to Look
… and refined the algorithm, the search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 inovirus-like sequences compared to the 56 … them, which means we can now study their biology much more meaningfully,” Roux noted of the result. “It troubled …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… division of labor between the two groups. Fungi are much more active in degrading plant matter, and bacteria are more active in fixing and metabolizing nitrogen, a key … transcriptome information allowed the team to have a much more comprehensive picture of microbial genes in the soil …
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Expanding Virophage Diversity
… 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in … some of the most pressing challenges of our time. For more information, please visit  …
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Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems
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Finding the Fermenters
… of metabolism, researchers recently compiled a list of with more than 8,300 organisms from multiple sources, including … series of large datasets. One test was to predict traits of more than 400 cultured rumen prokaryotes from the  …
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Green Algae Reveal One mRNA Encodes Many Proteins
… examples of polycistronic expression – in which two or more genes are encoded on a single molecule of mRNA – in two … some of the most pressing challenges of our time. For more information, please visit  …
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How Filamentous Fungi Sense Food
… cell-wall degrading enzymes (PCWDEs) that allow them to efficiently break down the wide array of simple and complex … carbohydrates, and then convert them into simple sugars. More importantly, when faced with a veritable buffet of … efficiently degrade the plant biomass. In order to learn more about these regulatory networks in the model fungus  N. …
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