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Woyke as a pioneer in uncovering the hidden diversity of “microbial dark matter”–that uncultured and unknown majority … around the planet–through techniques including single-cell genomics and metagenomics. They cited her “landmark” 2013 Nature paper , …

Tringe , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science … Student Research (SCGSR) program . Her research project, “Microbial Community Structure and Methane Production in … Kaze was part of the  2018 cohort of the JGI-UC Merced Genomics Internship Program, and is part of  Mark Sistrom’s …

… across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry … will assist researchers in moving toward functional genomics studies to learn more about the inner workings of … DE-AC02-05CH11231 within the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of …

… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … of Science User Facility. Y. lipolytica is a tantalizing microbial factory, capable of turning abundant biomass … genes were essential to  Y. lipolytica . They identified 1,377, or 17.5 percent, of  Y. lipolytica ’s genes to be …

Applications group to operate a similar single-cell genomics pipeline that provides JGI users access to the … His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional activities of specific microbial groups within complex communities.  The Microscale …

… for the data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining … updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, Palaniappan K, Ratner A, … et al. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic acids …

Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting researchers to submit … white papers to the Community Science Program’s  Functional Genomics call for proposals .  On July 8, JGI’s DNA … call is open year-round, but proposals submitted by July 30 will be included in the next review. “So webinars like …

U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The collection of the M. sinensis and M. sacchariflorus … and RAD-seq work was supported by EU FP7 KBBE.2011.3.1-02, grant number 289461 (GrassMargins) and the DOE … and Environmental Research (BER), grant nos. DE-SC0006634 and DE- SC0012379. The generation of the tetraploid M. …

… and sharing concepts, tools and research results in genomics, metagenomics and the human microbiome. The workshop will train … will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by …