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Maureen Berg
Maureen is currently developing new high-resolution and high-throughput methods to link uncultivated viruses to their host. With these new methods, she hopes to expand our understanding of the roles that viruses play in their ecosystems, …
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UC Merced Interns Reflect on Their JGI Summer Projects
Over the course of eight weeks this past summer, 10 students from UC Merced … students worked on ranged far and wide — from implementing new data visualization tools, to using natural language processing techniques to categorize genetic information. …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in … groups evolved further, to four major groups: a lineage in Australasia and L aciculospora, L. raphanica and L …
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Plant-Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … phenotype. We have recently identified resident bacteriophages (viruses infecting bacteria) in the plant … simiae WCS417. One suggested function of these phage genes is the modulation of their bacterial host to …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize …
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Extracting the Secrets of Secondary Metabolites
CRAGE-CRISPR combo helps further demystify biosynthetic gene … survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … luminescens and its secondary metabolites work could yield new tools for pest control. Secondary metabolites are highly …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both …   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days … need. Karolina is working to better understand what genetic features make CAM possible. So, she’s studying yuccas, a …
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A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
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Genomic profiles of four novel cyanobacteria MAGs from Lake Vanda, Antarctica: insights into photosynthesis, cold tolerance, and the circadian clock
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a … gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key …
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … tool will make the right cut, researchers created a set of guide RNAs that were effective against 94 percent of the … and xylose — into fatty acids that could be used for renewable fuel. In fact, lipids can make up more than 90 …
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Triggering Morel Fruiting
A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … in France and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … to an increasingly detailed portrait of molecular features triggering morel fruiting. They include: A diverse …
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