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Trent Northen
… Dr. Northen is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. … 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the …
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Habitat-Lite: A GSC Case Study Based on Free Text Terms for Environmental Metadata
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Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species
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An Earth Month Look at Sustainability Efforts at the JGI
… Sale. All year, the JGI helps support finding solutions to clean energy and environmental challenges. And many … which use less than half as much energy as other models. They also implemented the use of Klaatu, a freezer … experience, Ciobanu said. “If you want to learn both how to propagate and how to grow plants that are sustainable …
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Better Genome Editing for Bioenergy
… team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The … alternative sources. Moreover, the team says the approach they used to validate their set of guide RNAs could be … before felling their research problem: at a genetic level, how does  Y. lipolytica work? The project was a …
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JGI@25
… 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and … Notable Stories …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… of viruses in the same drop—the vast majority not harmful to humans could be even larger. Viruses infect bacteria, archaea and eukaryotes, and they range in particle and genome size from small, to large … and giant viruses offered the researchers insights into how they might interact with their hosts, and how those …
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A Mentor’s Perspective on Training the Next Generation
… Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab … and contribute to ongoing projects. In one way or another, they’ve all mentioned how invaluable their time at the JGI was and how great it …
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Cinnamic Acid and Sorbic acid Conversion Are Mediated by the Same Transcriptional Regulator in Aspergillus niger
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Fungal ecological strategies reflected in gene transcription ‐ a case study of two litter decomposers
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Cave Thiovulum (Candidatus Thiovulum stygium) differs metabolically and genomically from marine species
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What Happens Underground Influences Global Nutrient Cycles
… user facilities—the  Environmental Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have … four focused on biofuels and bioproducts. For example, Sabeeha Merchant of the University of California, Berkeley … leads to photosynthetic defects, offering insights into how algal ponds can regulate photosynthesis under …
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