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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … — small enough that thousands can be sequenced and compared using modern technologies. The JGI recognized this …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … LLMs aren’t just for understanding the human language and using it to communicate with machines. It has been applied … User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in … environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to … but, that was not a known fact in the field whatsoever.” Focusing on Carbon Flux and Future Directions The team reported …
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Identification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulator
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it … role that fungi can’t fulfill by fixing nitrogen and using it as an energy source. No fungi are known to be able … Institute and the Environmental Molecular Sciences Laboratory (grid.436923.9), which are DOE Office of Science User …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … that showcase our collaborations and capabilities to enable great science that will help solve energy and … at every meal.” McClean cites the common bean’s nutritional value, providing anywhere from 10-30% of daily protein …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a … Database has matured from six projects on a spreadsheet into a flagship  genomic metadata repository, making curated … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in … engineered for the biochemical conversion of glucose to value-added products are limited in chemical output due … but, that was not a known fact in the field whatsoever.” Focusing on Carbon Flux and Future Directions The team reported …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual … featured speakers who shared a look back at the JGI’s history, from its beginnings in the sequencing for the Human … on to explain that the JGI’s very first project — the revolutionary work of the human genome project, which spanned …
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