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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  … in part by the Allen Distinguished Investigator Program, through The Paul G. Allen Frontiers Group, the National …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach to better understand microbial … insights, significantly expanding the horizons of potential functions across various categories of proteins, …
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ClaMS: A Classifier for Metagenomic Sequences
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DOE JGI Metagenome Workflow
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Terabase-scale metagenome coassembly with MetaHipMer
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … genomes. That means that those viruses accessed many more potential microbial cells or hosts. This ability isn’t … XSEDE computing resource (award DEB170007), and through a Challenge Grant from the California NanoSystems …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are among … beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell … be the foundation upon which researchers can develop high-throughput and high-resolution studies of interactions …
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2024 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … systems. We optimize our service to the community through responsibly managing our people and resources.     … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to …
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The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments
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The initial soil microbiota impacts the potential for lignocellulose degradation during soil solarization
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In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3)
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Recoding of stop codons expands the metabolic potential of two novel Asgardarchaeota lineages
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