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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership … infrastructure of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant community …
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gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes
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Cellular assays identify barriers impeding iron-sulfur enzyme activity in a non-native prokaryotic host
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Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The … in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions …
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Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris)
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Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth … relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: …
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research … Institution of Oceanography … Vyshenska D, et al. 2023. A standardized quantitative analysis strategy for stable … Futures … Metagenome Science Program … Education … Selected Publications … Awards and Service …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … fungi. The work also suggests a new approach to gene annotation, which then can be explored in depth for multiple …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … (CSP) , as several approved proposals have contributed toward filling gaps on the fungal Tree of Life, including …
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Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis
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