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Webinar: SIP technologies at EMSL and JGI
… Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … with the laser ablation IRMS so we don’t quite have the spatial resolution at tens of microns or 100 microns, … don’t have a great way to resolve root respiration from microbial processes, but we’re not mixing the tracer with …
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … Soil Microbiome SFA. She serves as Secretary within the Microbial Ecology Section of the Ecological Society of America and is …
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Mapping the Earth’s Hidden Fungal Kingdom
… Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … like our 1000 Fungal Genomes Project established crucial phylogenetic frameworks spanning the entire kingdom. Stephen … centralizes this data for researchers worldwide. As the JGI scales toward 10,000 annotated genomes, this infrastructure …
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User Support Analysis Group
… epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product types, to the development of automated analysis pipelines for standard sequencing … products performed at scale. Our group also performs ‘proof-of principle’ research projects to demonstrate new …
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 … that reveals in situ functional activities of specific microbial groups within complex communities.  The Microscale …
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Complete Genome Sequences of Two Phylogenetically Distinct Nitrospina Strains Isolated from the Atlantic and Pacific Oceans
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Comparative Genomic Analysis of Phylogenetically Closely Related Hydrogenobaculum sp. Isolates from Yellowstone National Park
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Arachnid relationships based on mitochondrial genomes: Asymmetric nucleotide and amino acid bias affects phylogenetic analyses
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements … of bioinformatics tools for  extracting snippets of microbial genomes directly from environmental sequence data, … But each approach demonstrates its full value at different scales. Amplicon sequencing is commonly used to assess …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … researchers from 67 countries. Those from the JGI whose publications rank in the top 1% by citations for field and …
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Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus
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Phylogenetically distinct fungal expansins show different binding preferences towards cellulosic materials and enhance cellulase activity
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