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Taking Stock of the Known and Unknown Microbial Space
… diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … becoming available to the global research community.  Published January 17, 2025 in Science Advances , researchers at … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome … molecular methods to address wide-ranging questions existing in biology. He holds joint appointments as a Deputy … his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida Everglades evokes images of fanboats … provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the journal  … Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Gene and genome duplications have contrasting impacts on biosynthetic and flower developmental pathways in California poppy
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have … ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental and … Glycine max on Phytozome …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria … successfully automated aspects of a commonly-used process for studying microbial communities, with results published … steps. Ultimately, researchers found their updated strategy required one-sixth the labor of the manual process, allowing …
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Stage-resolved gene regulatory network analysis reveals developmental reprogramming and genes with robust stem-preferred expression in sorghum
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Georg Rath
… the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the boundary of … MRI Centre in Vienna, where he first stumbled from software development into building productive infrastructure in close collaboration with the local scientists. As the lead of the infrastructure team and the chair …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers …
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science user … large-scale AI-ready data and professional expertise to support the global research community in studies of complex biological and environmental systems. … its BER program, plays a central role in advancing this frontier by supporting the scientific foundations that …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. His research … JGI, he studied transcriptional regulation, metabolism and development in actinomycetes. He is particularly interested …
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W. Berkeley Kauffman
… Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the development of new applications utilizing a variety of …
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