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JGI@25: A Single Cell, Myriad Microbial Discoveries
… cells. The proof of principle study built off earlier approaches and offered a way for researchers to study the … cell. Several years later, the continuing single cell sequencing collaboration between the JGI and Bigelow Lab led … identify, and characterize more than 200 microbial genomes that were mapped to nearly 30 major previously …
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How Filamentous Fungi Sense Food
… and optimized by Ronan O’Malley, who leads the JGI’s Sequencing Technologies group. DAP-seq allowed the team to … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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VEGA Symposium
… DOE Joint Genome Institute, the 5th Viral EcoGenomics and Applications (VEGA) symposium will take place November … diversity toward innovative biotechnological and industrial applications.  …
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Accelerating Metagenomics Discoveries with Deep Learning
… learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole samples rather than … capitalize on these kinds of abilities by applying them to sequencing data. At the workshop, Volkan Sevim, a … aligning sequences with popular, but computationally costly approaches such as BLAST and hidden Markov models (HMMs), …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields … (DOE) also considers this to be a candidate bioenergy crop for its potential production of biomass on marginal … nearly 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed …
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A More Intuitive Phytozome Interface
… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 … and genome version you’re after.  You can even grab genomes based on which version of Phytozome (e.g., 9, 10, …
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… also one of the lead organizers of the Viral EcoGenomics & Applications (VEGA) Symposium , which will take place later … Model Soil Ecosystems,” uses a combination of experimental approaches and large-scale data analysis to better …
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Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study
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Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach
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Community‐Level Metabolic Shifts Following Land Use Change in the Amazon Rainforest Identified by a Supervised Machine Leaning Approach
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JGI Announces 2026 New Investigator Portfolio
… work advances genomic discoveries that can help lead to applications across critical sectors, including biological … bioproducts, and plant–microbe interactions that enhance crop resilience and soil health. Proposals are accepted …
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