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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D … Anaerobic gut fungi are an untapped reservoir of natural products. Proc Natl Acad Sci U S A. 2021;118. …
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A Grass Model to Help Improve Giant Miscanthus
… has been published. Analysis of the genome sequence also provides insights into how the multiple chromosomes of … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and collaborators across Europe and Asia. CABBI partners include the University …
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Webinar: PhycoCosm Tutorial
… sets the trees are based upon? A: This is still work in progress as new genomes are being added. We do plan to … only 2 of them. A: Watch the video (above) for the answer provided by Sara 4.  Q(uestion): Are all CSP produced data … model with PhycoCosm, how do we go about getting it in your system? A: I think the best way is to contact us for …
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JGI-UC Merced Interns Share Their 2021 Experiences
… virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in professional development enrichment activities. For some … Cross Species Integration of Single Cell Transcriptomes … Cross Species Comparison of Plant Single-cell Transcriptomes …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Building Sphagnum Genomic Resources
…   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for … researchers led by David Weston of Oak Ridge National Laboratory make the case for  sphagnum as “an unparalleled …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … for field and publication year are: Igor Grigoriev (Cross-field) Natalia Ivanova (Biology and Biochemistry) … all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the October …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … of the fittest” theory — the most expressed genes found across each of the fungal species were protein-coding …
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High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India
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How Filamentous Fungi Sense Food
… the University of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). The work was enabled in part … in depth for multiple models and their close relatives across the fungal tree of life, enriching the work being done …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields … around the world whose livelihoods depend on cotton production, and the crop’s annual economic impact of $500 … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Trent Northen
… has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and … of advanced mass spectrometry approaches and model laboratory ecosystems (EcoFABs). … Trent Northen is the Metabolomics Science Program Head at the JGI. Click to learn more about the …
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