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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are among … recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA stable isotope probing (DNA SIP) relies on incubating …
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … Cas9 needs guide RNA to lead it to the correct sequence to snip — but not all guides are effective. To … sgRNA sequences: six for every gene in the genome. The JGI  DNA Synthesis Science team synthesized these sgRNAs, cloning …
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Dan Rokhsar
… directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … and animals by combining computational genome analysis, sequence-based genetic methods, and comparative … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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UC Merced Interns Reflect on Their JGI Summer Projects
Over the course of eight weeks this past summer, 10 students from UC Merced … on research projects that contribute to the larger mission of the U.S. Department of Energy. Students also worked with … worked on ranged far and wide — from implementing new data visualization tools, to using natural language processing …
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … assumed, due to the wide and varied geographic footprint of the plant, that eelgrass began colonizing the oceans  … locations.  One group investigated changes in protein sequences, while others analyzed single point mutations …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a … first legume species with a published complete draft genome sequence. At the time, the vital global source of both … guys,” said Duplessis, who has collaborated with the JGI on multiple projects involving rust pathogens. “All along the …
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Interactions between plants and soil shaping the root microbiome under abiotic stress
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Exometabolomics and MSI: deconstructing how cells interact to transform their small molecule environment
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Development of a toolbox to dissect host-endosymbiont interactions and protein trafficking in the trypanosomatid Angomonas deanei
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Energy efficiency and biological interactions define the core microbiome of deep oligotrophic groundwater
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Metabolic interactions underpinning high methane fluxes across terrestrial freshwater wetlands
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