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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … assembly and analysis.   To put these efforts into perspective, we caught up with JGI staff, collaborators and …
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New Research Sheds Light on Diversity in the Deep Sea
… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. At these vents, and underwater volcanoes,  … analysis, providing authors a more complete picture of the taxonomic composition and metabolic potential of the …
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Expanding Virophage Diversity
… DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … and even animal and human (for the first time) gut and taxonomically classified into 27 distinct clades (17 of them …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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Genome-informed Bradyrhizobium taxonomy: where to from here?
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements … metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell … the genomes of tens of thousands of previously unknown and uncultivated microbes through metagenomics. Such techniques …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company … from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a … such as: The ability to select data by type or taxonomic group The ability to see, at a glance, the number …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in … his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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The CC–NB–LRR protein BSR1 from Brachypodium confers resistance to Barley stripe mosaic virus in gramineous plants by recognising TGB1 movement protein
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in … observations regarding the contributions of algae and viruses to the ecosystem were noted, but require further … Antarctic Science program (project 4031). The work conducted by the US Department of Energy Joint Genome …
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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … were performed under the Facilities Integrating Collaborations for User Science (FICUS) initiative and used resources …
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