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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … mycorrhizal fungus shifted the focus from looking at single organisms to applying a broader ecosystem perspective, …
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The Power of One, Amplified
A preview of how large-scale single cell genomics … mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant … Microscale Applications group . Cells were randomly sorted, whole genome amplified, then sequenced and assembled. Robert …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the ancestor to eelgrass underwent a whole genome duplication event, doubling all of its …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric … Earth’s climate. Most methane is produced in environments without oxygen through a process called methanogenesis. … enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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Thermus sediminis sp. nov., a thiosulfate-oxidizing and arsenate-reducing organism isolated from Little Hot Creek in the Long Valley Caldera, California
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John Vogel
… techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress … Department of Plant Biology … Scarlett, et. al. 2023 Multiple origins, one evolutionary trajectory: gradual … Visiting Fellowship Australia … Education … Selected Publications … Awards and Service …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, we’ve … of California Santa Barbara. So plants don’t break down without a fight, but it’s an important battle to fine-tune. … Annual Meeting . In an herbivore’s poop sample, there’s a whole heap of microbes, each potentially contributing to …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons … one of the first students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Chloroflexi CL500-11 Populations That Predominate Deep-Lake Hypolimnion Bacterioplankton Rely on Nitrogen-Rich Dissolved Organic Matter Metabolism and C1 Compound Oxidation
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Yasuo Yoshikuni
… production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating … transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains., Microbial … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), … students. Being able to do this was beneficial to her in multiple ways. “At Berkeley Lab, we have an established set …
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