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Antarctic lake viromes reveal potential virus associated influences on nutrient cycling in ice-covered lakes
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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
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iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria
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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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Phylogenetic proximity is a key driver of temporal succession of marine giant viruses in a five-year metagenomic time-series
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Silver age of GOLD introduces new features
… making curated microbiome metadata that follows community standards freely available, and enabling large-scale … genomic data usage is having the appropriate contextual information, or metadata, stored with them. GOLD provides … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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Mapping the Earth’s Hidden Fungal Kingdom
… comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over the past billion … and ancient origins, fungi remain largely mysterious. Only about 200,000 fungal species have been named. Among those … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations …
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Extracting Protein-Protein Interactions (PPIs) from Biomedical Literature using Attention-based Relational Context Information
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Information theory and machine learning illuminate large‐scale metabolomic responses of Brachypodium distachyon to environmental change
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… of the brightest minds in genetics as part of our  2022 Annual Meeting . The meeting was a hybrid event, with guests … lot of unlocked questions to answer,” she said. Learn more about Doudna and her latest work at the  Innovative Genomics … beginning to understand,” Wessler said, in closing. More information about Susan Wessler’s work is available on the  …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes … University of Thessaloniki, Greece PhD in Molecular Biology and Biotechnology, University of Crete, Greece …
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