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… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … assess CRAGE’s impact, including how this application could scale,” says Mouncey. The JGI team has already demonstrated … Science Program (CSP)  Functional Genomics proposal call. …

Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, … traits that make them easy to work with bioinformatically and in the laboratory. “We are fortunate because the … quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. …

… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence …

… relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … a special kind of plant metabolism. This metabolism, called crassulacean acid metabolism, or CAM — that’s C-A-M, …

… lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … With so many fungal  genomes , the team conducted a large-scale comparison, charting several changes caused by the … generated by the JGI more than a decade ago. Having these datasets will assist researchers in moving toward functional …

… ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … and that’s going really well. And having the sequence data available for us to enable that research will have a …

Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … findings also illustrate what’s happening on a spatial scale. Breaking down plant matter by fungi is happening much …

Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area …