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JGIota: Looking Back at Sequencing for Soybeans
… The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, …
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Genome sequences of four novel Endozoicomonas strains associated with a tropical octocoral in a long-term aquarium facility.
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … to those who study it) a powerful reference organism for studying photosynthesis and cell motility. It’s also a … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in … Palindromes are large inverted repeats with highly similar sequences so that their sequences read the same (or nearly) …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome … development of novel computational tools to identify virus sequences, the design of new experimental approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and … forms the basis of their behavior in the environment. Large metagenomic surveys could lead to better predictive models …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and … the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … bioproducts. Summary Researchers at the University of California, Davis and UC Santa Barbara generated a list of …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 … of these varied biomes; the forests share only about 20% of their fungal species. To make useful comparisons, the … to functions and fungal species. Initially, mapping RNA sequences this way was challenging, according to Martin. …
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Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species
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Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics
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Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil
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