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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading enzymes (PCWDEs) that allow …
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … from greening disease. You’ve probably never heard of trifoliate orange. Otherwise known as  Poncirus … National Laboratory (Berkeley Lab), played a critical role in assembling, annotating and analyzing the genome in …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific … students (and their mentors) how to begin establishing a professional presence through getting credit for any … how to identify their contributions using the Contributor Roles Taxonomy and what sorts of platforms researchers use …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … churned out, we start to really see the utility of them broaden,” Wilhelm said.  Sharing Ideas to Improve … of Lawrence Livermore National Lab also played key roles in creating sessions where attendees could focus on …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements … studies. The Science Researchers demonstrated the value of conducting large-scale single cell genomics by collecting … from each single cell. The team showed that while the broad nucleotide-level diversity was similar across the …
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at … results validate how mycorrhizal fungi play an integral role in soil carbon storage. Summary There are three types …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired … interactions to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their … below. Name: Noelle Anderson Class Year: At the time of the internship, 4th year PhD student in Quantitative and …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … Shiitake mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese … for  biofuel production. Additionally, these fungi play a role in the global  carbon cycle . As …
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Cultivating Symbiotic Antarctic Microbes
The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in environmental processes (related to interactions of soil-sediment environments, water and air-atmosphere with …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … plan aligns the DOE Office of Science user facility with broader national efforts to promote and stimulate a … The user facility’s new plan goes beyond outlining a broad vision and multiple scientific, technological, and …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even … new research questions. Among them, is the bacterium’s role in the mangrove ecosystem. “We know that it’s growing … is whether the new organelles named pepins played a role in the evolution of the Thiomargarita magnifica extreme …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, land plant evolution. Recent findings in … bioprospecting — paving the way for C-fern to expand its role as a key plant system for teaching next-generation …
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