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A k-mer-based approach for phylogenetic classification of taxa in environmental genomic data.
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Coordinating Environmental Genomics and Geochemistry Reveals Metabolic Transitions in a Hot Spring Ecosystem
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently … strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous Fungus” and that are …
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A unified initiative to harness Earth's microbiomes
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Terabase-Scale Coassembly of a Tropical Soil Microbiome
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video … below, captions are available) spotlighted the metabolomic analysis capability available through the  Community Science … it makes its sequencing, synthesis, metabolomics and data analyses capabilities available on a peer-reviewed …
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Novel function of the human presqualene diphosphate phosphatase as a type II phosphatidate phosphatase in phosphatidylcholine and triacylglyceride biosynthesis pathways
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to metabolizing … in the next generation of flowering vegetation. In return for their services, bees eat plant nectar and pollen. Nectar … that interested the authors was that an evolutionary analysis of  Bifidobacterium strains in honey bees and …
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Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the … novel tools for large-scale in situ gene expression analysis in multicellular organisms. During his postdoctoral … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …
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