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Bacteria and Fungi Divvy Up the Work in Forest Floor
… when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria and fungi have genes that can break … proteins in the samples were then isolated and sequenced by scientists at the Environmental Molecular Sciences …
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Discovery of Novel Plant Interaction Determinants from the Genomes of 163 Root Nodule Bacteria
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Doubling Down on Known Protein Families
… that single beam. When it comes to microbial communities, scientists have historically been unable to see beyond the … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … diversity has doubled, but in reality it could be three or four or five or tenfold more out there.” Digging Further into …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his … of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus … a part of the students’ thesis,” she says. “Second, we want our students to gain the opportunity to see what research is …
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You Can Move, But You Can’t Hide
… mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic entities … National Laboratory (Berkeley Lab), with computing resources provided by NERSC, another user facility at Berkeley … genomics of MGEs and their evolution at the cellular level, scientists can better understand ecosystem-wide processes. …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
Congratulations to Susannah Tringe , one of eight scientists and engineers who received the 2020 Ernest … is the interim director of Berkeley Lab’s Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s …
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Introducing New Members of the JGI User Executive Committee
The JGI welcomes three new members to the JGI User Executive … review procedures and the organization of the JGI Annual Genomics of Energy & Meeting. Any investigator who has been … for three additional positions on the UEC. Thirty-four JGI users were nominated, representing a breadth of …
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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
While summer interns at the JGI from multiple programs had their own goals to achieve, … they constantly collaborated with each other on new ways of presenting and researching science. …
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A Grass Model to Help Improve Giant Miscanthus
… insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for … team. The work was a joint effort led by scientists at the  Center for Advanced Bioenergy and … to novel traits.  M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … process. The isotope labeling incubations can take hours to months, followed by weeks of tricky, laborious lab … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Viruses Reprogram Cells into Different Virocells
… infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … In  their study , which appeared in  The ISME Journal , they focused on how virus-infected microbes are … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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