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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … lab in Mulford Hall. There, they conducted DNA analyses of samples collected on recent SOD Blitz expeditions. The team …
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You Can Move, But You Can’t Hide
… mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic entities … A software tool  recently described in  Nature Biotechnology  called geNomad identifies and classifies MGEs … National Laboratory (Berkeley Lab), with computing resources provided by NERSC, another user facility at Berkeley …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms … interactions. This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew … the cell. The team assembled 130 genomes from their sample — a small proportion of the sample’s billions of …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s … But every part of this project depends on lakewater samples — so this episode is a look at how researchers get …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to … But not all scientists have the expertise and resources to do DNA design and synthesis work. This is where … group at the Swiss Federal Institute of Aquatic Science and Technology in September 2021. Robinson stressed that the DNA …
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JGI Launches Latest Strategic Plan
… — A Vision for Integrative and Collaborative Genome Science , the culmination of an eight-month intensive … and incubation process. “JGI’s ‘vision’ is truly a tour de force,” said Mary Maxon, Biosciences Associate … of a Secondary Metabolites research group (pages 47-49). “Our hope is to circulate this document widely within the …
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Soil metabolome response to whole-ecosystem warming at the Spruce and Peatland Responses under Changing Environments experiment
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Comparative transcriptomics and metabolomics reveal specialized metabolite drought stress responses in switchgrass (Panicum virgatum)
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Information theory and machine learning illuminate large‐scale metabolomic responses of Brachypodium distachyon to environmental change
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … Underground Research Laboratory, Hokkaido, Japan. From samples of both environments, they used fluorescence  in … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for the global research … and stimulate a bioeconomy, where renewable, biological resources drive processes, products, and services.  Advancing … will bridge fundamental knowledge gaps to advance biotechnology and biomanufacturing.  As a leader in genomics …
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DOE JGI Interns Share Their Summer Experiences
DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns were two undergraduate students … . CAMP is a statewide initiative funded by the National Science Foundation (NSF) and supports underrepresented minorities in science, technology, engineering and math (STEM) fields. This summer, …
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