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Prepublication data sharing
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Clustering Categorical Data
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Philympics 2021: Prophage Predictions Perplex Programs
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… into a written report that is published in a scientific journal is the ultimate achievement. To get to this point … and it feels so rewarding,” Wint said. For Axel Visel, JGI Science Deputy and a co-founder of the internship program, … ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted …
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … genes associated with a given transcription factor is resource-intensive and unscalable. To test the efficacy of …
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JGI Mural
… genomics. Click on the images below to learn about the science depicted. The two-story JGI mural was commissioned …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers … of the  Marchantia pangenome, scientists developed a resource that associates plant’s genetic variants with specific … no. DE-AC02-05CH11231. This project received funding from the European Research Council under the European …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria and fungi have genes that can break … Czech Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein …
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iPHoP: A Matchmaker for Phages and their Hosts
… computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … nutrient cycling, or carbon sequestration. Summary Existing programs use a variety of approaches to match a virus with a … used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus …
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… bioeconomy, including, potentially, methane as an energy source.  Until recently, our understanding of these … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Gotta Catch 'Em Gall
… young in structures called galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these weird …
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